Genome sc|0000433


Database

NCBI Assembly

Accession

GCA_030378105.1

Genomics

Accession
NCBI Assembly:GCA_030378105.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 98.0%
  • Contamination: 0.0%
  • Quality: 98.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
204.0 ×
Source
Other features
  • G+C Content: 34.0%
  • Coding Density: 82.58%
  • Codon Table: 11
  • N50: 25,054 bp
  • Contigs: 326
  • Largest Contig: 107,543 bp
  • Assembly Length: 5,200,308 bp
  • Ambiguous Assembly Fraction: 0.011%
Submitter comments
The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA project. The completion figure from CheckM was 98% (0% contamination), while MiGA project informed 100% (0% contamination). This genome is proposed as the type for the new species Halobeggiatoa hulotii
Automated checks
Complete

Last modified 11 months ago


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