Genome sc|0000433

Genomics

Accession

NCBI Assembly:GCA_030378105.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 98.0%
• Contamination: 0.0%
• Quality: 98.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

204.0 ×

Source

• BioSample: SAMN35709904

Other features

• G+C Content: 34.0%
• Coding Density: 82.58%
• Codon Table: 11
• N50: 25,054 bp
• Contigs: 326
• Largest Contig: 107,543 bp
• Assembly Length: 5,200,308 bp
• Ambiguous Assembly Fraction: 0.011%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA project. The completion figure from CheckM was 98% (0% contamination), while MiGA project informed 100% (0% contamination). This genome is proposed as the type for the new species Halobeggiatoa hulotii. 

Automated checks

Complete