Genome sc|0000434

Genomics

Accession

NCBI Assembly:GCA_030377915.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 91.0%
• Contamination: 3.0%
• Quality: 76.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 6 amino acids

Sequencing depth

38.0 ×

Source

• BioSample: SAMN35709916

Other features

• G+C Content: 28.0%
• Coding Density: 91.13%
• Codon Table: 11
• N50: 13,589 bp
• Contigs: 266
• Largest Contig: 62,255 bp
• Assembly Length: 2,087,727 bp
• Ambiguous Assembly Fraction: 0.0051%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is available in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and the MiGA project. The completion figure from CheckM was 91% (3%contamination), while MiGA project informed 91% (0% contamination). The consensus completion is 91%. The number of tRNAs found by the PGAP is 10, but Prokka informed 6. This genome is proposed as the type for the new species Filamentium carolae. 

Automated checks

Complete