Genome sc|0000435

Genomics

Accession

NCBI Assembly:GCA_030377885.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 91.3% (automated estimate: 88.7%)
• Contamination: 0.0% (automated estimate: 3.8%)
• Quality: 91.3 (automated estimate: 69.7)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 0)
• 1 23S rRNA (up to 100.0%) (automated estimate: 0)
• tRNAs for 19 amino acids (automated estimate: 17)

Sequencing depth

70.0 ×

Source

• BioSample: SAMN35709915

Other features

• G+C Content: 46.0% (automated estimate: 45.67%)
• Coding Density: 82.14%
• Codon Table: 11
• N50: 64,180 bp
• Contigs: 130
• Largest Contig: 181,369 bp
• Assembly Length: 4,658,827 bp
• Ambiguous Assembly Fraction: 0.032%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA project. The completion from CheckM was 91% (0% contamination), while MiGA project informed 91.3% (0% contamination). This genome is proposed as the type for the new species  Sedimentiflexa bahamondeae. 

Automated checks

Complete