Genome sc|0000436

Genomics

Accession

NCBI Assembly:GCA_030378015.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 91.3%
• Contamination: 0.0%
• Quality: 91.3

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 17 amino acids

Sequencing depth

74.0 ×

Source

• BioSample: SAMN35709909

Other features

• G+C Content: 46.0%
• Coding Density: 76.9%
• Codon Table: 11
• N50: 22,761 bp
• Contigs: 389
• Largest Contig: 74,420 bp
• Assembly Length: 6,012,168 bp
• Ambiguous Assembly Fraction: 0.038%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and the MiGA project. The completion figure from CheckM was 91%, while the MiGA project informed 91.3% (0% contamination). This genome is proposed as the type for the new species Desulfonema wilhelmii. 

Automated checks

Complete

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Last modified 11 months ago