Genome sc|0000437

Genomics

Accession

NCBI Assembly:GCA_030377865.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 91.3%
• Contamination: 0.0%
• Quality: 91.3

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

70.0 ×

Source

• BioSample: SAMN35709915

Other features

• G+C Content: 46.0%
• Coding Density: 82.46%
• Codon Table: 11
• N50: 55,343 bp
• Contigs: 143
• Largest Contig: 148,046 bp
• Assembly Length: 4,988,988 bp
• Ambiguous Assembly Fraction: 0.044%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for genome annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is available in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and the MiGA project. The completion from the CheckM was 91% (0% contamination), while MiGA project informed 91.3% (0% contamination). This genome is proposed as the type for the new species Sedimentiflexa bahamondeae. 

Automated checks

Complete

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Last modified 11 months ago