SeqCode Registry
cognitis nomina
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Genomes
sc|0000466
JSON
Genome sc|0000466
Database
NCBI Assembly
Accession
PPHI00000000
Genomics
Accession
NCBI Assembly:
PPHI00000000
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
97.58%
(automated estimate: 92.5%)
Contamination:
2.35%
(automated estimate: 0.9%)
Quality:
85.83
(automated estimate: 88.0)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
(automated estimate: 1)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN08372837
Other features
G+C Content:
55.3%
(automated estimate: 55.3%)
Coding Density:
88.79%
Codon Table:
11
N50:
157,461 bp
Contigs:
99
Largest Contig:
717,461 bp
Assembly Length:
7,401,563 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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