SeqCode Registry
cognitis nomina
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Genomes
sc|0000468
JSON
Genome sc|0000468
Name
“Carboxydicoccus profundi”
Database
NCBI Assembly
Accession
GCA_002710215.1
Genomics
Accession
NCBI Assembly:
GCA_002710215.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.5%
Contamination:
2.9%
Quality:
78.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 59.0%)
1 23S rRNA (up to 48.0%)
tRNAs for 20 amino acids
Source
BioSample: SAMN07618500
Other features
G+C Content:
57.5%
Coding Density:
85.51%
Codon Table:
11
N50:
52,380 bp
Contigs:
76
Largest Contig:
169,477 bp
Assembly Length:
3,074,704 bp
Ambiguous Assembly Fraction:
0.2%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2011
Location
Not detected
Toponym
Geo Loc Name:
Atlantic Ocean
Environment
Sample Type:
metagenomic assembly
Env Biome:
marine pelagic biome
Isolation Source:
South Atlantic Ocean
Other
Host:
not applicable
Depth:
5-1000m
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN07618500
: 2,631 Draft Metagenome-Assembled Genomes from the Global Oceans
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN07618500
×
collection_date
2011
note
This BioSample is a metagenomic assembly obtained from the publically available reads for the TARA Oceans Project deposited in the Sequence Read Archive (SRA) database with runs accessions ERR1719443, ERR1719515, ERR1719172, ERR1719375, ERR868357, ERR599353, ERR868362, ERR599346, ERR1719332, ERR1719420, ERR1719146, ERR1719321, ERR868422, ERR868440, ERR599349, ERR599050, ERR598967, ERR868404, ERR868415, ERR599093, ERR599120, ERR599042, ERR599079, ERR1712093, ERR1712225, ERR599071, ERR599085, ERR599024, ERR1719156, ERR1719428, ERR1726634, ERR1726656, ERR1719388, ERR868493, ERR599342, ERR1726527, ERR1726609, ERR1739847, ERR1739848, ERR1740118, ERR1740132, ERR868424, ERR868465, ERR599359, ERR1711958, ERR1712104, ERR868453, ERR868457, ERR599375, ERR599039, ERR1711937, ERR1712134, ERR1726602, ERR1711886, ERR1712078, ERR868442, ERR599014, ERR1712025, ERR1712201, ERR1712124, ERR1712224, ERR868364, ERR868438, ERR599020, ERR868443, ERR1719191, ERR1719236, ERR1711904, ERR1711985, ERR868476, ERR599357, ERR1719262, ERR1719355, ERR1711977, ERR1712144, ERR868381, ERR599369, ERR599086, ERR873963, ERR599368, ERR598954, ERR598957, ERR599072, ERR594292, ERR594307, ERR594306, ERR1719159, ERR1719463, ERR1726556, ERR1711869, ERR1712118, ERR1712182, ERR868475, ERR868513, ERR599380, ERR594309, ERR594305, ERR594322, ERR873959, ERR873968, ERR599341, ERR594284, ERR594304, ERR594301, ERR868419, ERR868425, ERR599377, ERR594326, ERR594347, ERR1719256, ERR1719298, ERR868466, ERR868469, ERR599378, ERR634968, ERR594293, ERR594337, ERR594319, ERR868360, ERR868481, ERR599343, ERR599348, ERR594287, ERR594311, ERR594296, ERR588857, ERR1719194, ERR1719389, ERR1719448, ERR1726725, ERR1719160, ERR1719214, ERR1719301, ERR868363, ERR868489, ERR599354, ERR594285, ERR594343, ERR594338, ERR868371, ERR868491, ERR868494, ERR599367, ERR594344, ERR594339, ERR594323, ERR1719213, ERR1719404, ERR1719459, ERR1726643, ERR1726714, ERR1726846, ERR1719207, ERR1719316, ERR1719395, ERR868352, ERR868382, ERR599337, ERR594341, ERR594342, ERR594300, ERR868359, ERR868426, ERR599338, ERR599038, ERR1719243, ERR1719327, ERR1719311, ERR1719364, ERR1719405, ERR868462, ERR599032, ERR1719333, ERR1719439, ERR1719324, ERR1719380, ERR868458
organism
Chloroflexota bacterium
metagenomic
1
collected_by
Tara Oceans Consortium
sample_type
metagenomic assembly
environmental-sample
1
metagenome-source
marine metagenome
isolate
SAT91
NCBI submission package
Microbe.1.0
depth
5-1000m
host
not applicable
geo_loc_name
Atlantic Ocean
env_biome
marine pelagic biome
isolation_source
South Atlantic Ocean
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2017-09-07
ENA-LAST-UPDATE
2023-02-14
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