JSON

Genome sc|0000470

Name

“Methanosuratincola petrocarbonis”

Database

NCBI Assembly

Accession

GCA_030522375.1

Genomics

Accession
NCBI Assembly:GCA_030522375.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
300.0 ×
Source
Other features
  • G+C Content: 54.42%
  • Coding Density: 89.39%
  • Codon Table: 11
  • N50: 1,538,194 bp
  • Contigs: 1
  • Largest Contig: 1,538,194 bp
  • Assembly Length: 1,538,194 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality including completeness, contamination was evaluated using CheckM. 16S and 23S rRNA sequences from MAGs were called using barrnap. tRNAs were detected using tRNAscan-SE. 
The complete 1.54 megabase pair (Mbp) circular genome of strain LWZ-6 (DNA G+C content of 54.42 mol%; 1606 open reading frames) was obtained by reassembly of Nanopore and Illumina sequencing data. Strain LWZ-6 employs obligate H2-dependent methylotrophic methanogenesis (Methanol and monomethylamine).
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved 12 months ago


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