SeqCode Registry
cognitis nomina
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Genomes
sc|0000491
JSON
Genome sc|0000491
Database
NCBI Assembly
Accession
GCA_947381495
Genomics
Accession
NCBI Assembly:
GCA_947381495
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.91%
(automated estimate: 100.0%)
Contamination:
0.54%
(automated estimate: 0.9%)
Quality:
96.21
(automated estimate: 95.5)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 91.7%)
(automated estimate: 1)
2 23S rRNAs (up to 56.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
SRA: ERR10502666
Other features
G+C Content:
50.43%
(automated estimate: 50.43%)
Coding Density:
87.02%
Codon Table:
11
N50:
34,351 bp
Contigs:
393
Largest Contig:
100,324 bp
Assembly Length:
1,861,581 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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