SeqCode Registry
cognitis nomina
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Genomes
sc|0000492
JSON
Genome sc|0000492
Database
NCBI Assembly
Accession
GCA_947381485
Genomics
Accession
NCBI Assembly:
GCA_947381485
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.91%
(automated estimate: 100.0%)
Contamination:
1.63%
(automated estimate: 1.9%)
Quality:
90.76
(automated estimate: 90.5)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 96.4%)
(automated estimate: 2)
1 23S rRNA (up to 68.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
SRA: ERR10502747
Other features
G+C Content:
48.49%
(automated estimate: 48.49%)
Coding Density:
87.3%
Codon Table:
11
N50:
53,217 bp
Contigs:
237
Largest Contig:
181,691 bp
Assembly Length:
2,158,112 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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