SeqCode Registry
cognitis nomina
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Genomes
sc|0000495
JSON
Genome sc|0000495
Database
NCBI Assembly
Accession
GCA_947387525
Genomics
Accession
NCBI Assembly:
GCA_947387525
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.7%
(automated estimate: 100.0%)
Contamination:
1.09%
(automated estimate: 1.9%)
Quality:
93.25
(automated estimate: 90.5)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 80.0%)
(automated estimate: 2)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
SRA: ERR10502714
Other features
G+C Content:
44.81%
(automated estimate: 44.81%)
Coding Density:
86.81%
Codon Table:
11
N50:
50,711 bp
Contigs:
148
Largest Contig:
175,812 bp
Assembly Length:
1,933,329 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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