SeqCode Registry
cognitis nomina
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Genomes
sc|0000496
JSON
Genome sc|0000496
Database
NCBI Assembly
Accession
GCA_947387495
Genomics
Accession
NCBI Assembly:
GCA_947387495
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.46%
(automated estimate: 100.0%)
Contamination:
0.0%
(automated estimate: 0.9%)
Quality:
99.46
(automated estimate: 95.5)
Ribosomal and transfer RNA genes
3 16S rRNAs (up to 100.0%)
(automated estimate: 1)
2 23S rRNAs (up to 39.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
SRA: ERR10502725
Other features
G+C Content:
47.38%
(automated estimate: 47.79%)
Coding Density:
87.59%
Codon Table:
11
N50:
35,747 bp
Contigs:
293
Largest Contig:
98,668 bp
Assembly Length:
1,876,915 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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