SeqCode Registry
cognitis nomina
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Genomes
sc|0000499
JSON
Genome sc|0000499
Database
NCBI Assembly
Accession
GCA_947381515
Genomics
Accession
NCBI Assembly:
GCA_947381515
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
(automated estimate: 99.1%)
Contamination:
8.5%
Quality:
56.6
Ribosomal and transfer RNA genes
1 16S rRNA (up to 87.2%)
(automated estimate: 1)
1 23S rRNA (up to 70.0%)
tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
SRA: ERR10502757
Other features
G+C Content:
28.34%
(automated estimate: 28.34%)
Coding Density:
81.15%
Codon Table:
11
N50:
189,439 bp
Contigs:
186
Largest Contig:
314,286 bp
Assembly Length:
3,507,657 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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