Genome sc|0000005

Genomics

Accession

NCBI Assembly:GCA_003056285.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.03%
• Contamination: 0.49%
• Quality: 96.58

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 14 amino acids

Sequencing depth

75.0 ×

Source

• SRA: SRX14024004

Other features

• G+C Content: 51.29%
• Coding Density: 83.79%
• Codon Table: 11
• N50: 55,247 bp
• Contigs: 39
• Largest Contig: 161,417 bp
• Assembly Length: 1,536,389 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 3 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN06684313

Date

Collection Date: 2013-04

Location

Lat Lon: 38° 3′ 47″ S, 176° 21′ 36″ E

View sampling location map

Toponym

Geo Loc Name: New Zealand: Rotorua

Environment

Env Material: water and sediment

Env Biome: terrestrial geothermal area

Isolation Source: terrestrial hot spring

Other

Ph: 6.48

Depth: 4 m

Temp: 78.5

Package

Ncbi Submission Package: MIMS.me.water.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.water

All retrieved samples

• SAMN06684313: MIMS Environmental/Metagenome sample from hot springs metagenome

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Metadata retrieved 3 months ago