JSON

Genome sc|0000503

Database

NCBI Assembly

Accession

GCA_942492785

Genomics

Accession
NCBI Assembly:GCA_942492785
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 95.27% (automated estimate: 98.1%)
  • Contamination: 0.9% (automated estimate: 3.8%)
  • Quality: 90.77 (automated estimate: 79.1)
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%) (automated estimate: 2)
  • 2 23S rRNAs (up to 100.0%) (automated estimate: 2)
  • tRNAs for 20 amino acids (automated estimate: 20)
Sequencing depth
131.0 ×
Source
Other features
  • G+C Content: 51.61% (automated estimate: 51.61%)
  • Coding Density: 87.46%
  • Codon Table: 11
  • N50: 2,938,053 bp
  • Contigs: 1
  • Largest Contig: 2,938,053 bp
  • Assembly Length: 2,938,053 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completion and contamination were estimated by CheckM2. Even for the circular genomes, the completeness is only estimated to around 96%, which we thus assume reflects the "complete" set of conserved single copy genes in cable bacteria.
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved 12 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license