SeqCode Registry
cognitis nomina
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Genomes
sc|0000007
JSON
Genome sc|0000007
Name
Benthortus lauensis
Ts
Database
NCBI Assembly
Accession
GCA_021650775.1
Genomics
Accession
NCBI Assembly:
GCA_021650775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.0%
Contamination:
2.94%
Quality:
79.3
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
34.0 ×
Source
SRA: SRX10856250
Other features
G+C Content:
54.8%
Coding Density:
93.81%
Codon Table:
11
N50:
19,743 bp
Contigs:
112
Largest Contig:
63,947 bp
Assembly Length:
1,470,116 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2015-05-10
Location
Lat Lon:
21.9904 S 176.5692 W
Toponym
Geo Loc Name:
Pacific Ocean
Environment
Isolation Source:
hydrothermal vent deposit
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS5961194
: J2-819-10-R1
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS5961194
×
Retrieved via SRX10856250
INSDC secondary accession
SRS5961194
NCBI submission package
Metagenome.environmental.1.0
lat lon
21.9904 S 176.5692 W
organism
hydrothermal vent metagenome
collection date
2015-05-10
isolation source
hydrothermal vent deposit
geo loc name
Pacific Ocean
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-10-01
ENA-LAST-UPDATE
2021-02-28
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