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Genome sc|0000071

Database

INSDC Nucleotide

Accession

CP098020.1

Genomics

Accession
INSDC Nucleotide:CP098020.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.0% (automated estimate: 97.2%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 90.0 (automated estimate: 92.7)
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%) (automated estimate: 2)
  • 2 23S rRNAs (up to 100.0%) (automated estimate: 2)
  • tRNAs for 42 amino acids (automated estimate: 17)
Sequencing depth
62.0 ×
Source
Other features
  • G+C Content: 57.2% (automated estimate: 57.23%)
  • Coding Density: 86.64%
  • Codon Table: 11
  • N50: 2,526,949 bp
  • Contigs: 1
  • Largest Contig: 2,526,949 bp
  • Assembly Length: 2,526,949 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not available
Location
Lat Lon: 5.931 N 73.304 W
Toponym
Geo Loc Name: Colombia:Gambita
Environment
Isolation Source: decomposition metagenome
Env Broad Scale: ENVO:00002261
Env Local Scale: ENVO:00002261
Env Medium: ENVO:00001998
Other
Not detected
Package
Ncbi Submission Package: MIMAG.5.0
Biosamplemodel: MIMAG
Additional Accessions
SAMN28657967, SAMN28657968, SAMN28657969 Append as BioSamples
All retrieved samples
Metadata retrieved 6 months ago


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