JSON

Genome sc|0000077

Name

Omnitrophus fodinaeTs

Database

NCBI Assembly

Accession

GCA_000405945.1

Genomics

Accession
NCBI Assembly:GCA_000405945.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 65.01%
  • Contamination: 0.56%
  • Quality: 62.21
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Source
Other features
  • G+C Content: 49.56%
  • Coding Density: 93.69%
  • Codon Table: 11
  • N50: 20,345 bp
  • Contigs: 150
  • Largest Contig: 75,002 bp
  • Assembly Length: 2,037,078 bp
  • Ambiguous Assembly Fraction: 0.001%
Submitter comments
Quality metrics were assessed using CheckM v. 2. This genome has lower completeness than suggested by standards but we request lowering of the requirement here, because this is a historical name and allows us to keep the nomenclature for the entire phylum. Despite several attempts at recovering a higher completeness genome from metagenomic data, there has been no other genomes recovered for the genus, thus in order to retain the historical genus through phylum names with the least amount of confusion, we request special consideration for validation with this genome as type. 
Automated checks
Complete
Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: Generic.1.0
Biosamplemodel: Generic
All retrieved samples
Metadata retrieved about 1 month ago

Sequencing Experiments

candidate division OP3 bacterium SCGC AAA011-A17


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