Genome sc|0000080

Genomics

Accession

INSDC Nucleotide:JAOANE000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.73%
• Contamination: 0.09%
• Quality: 99.28

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

22.0 ×

Source

• BioSample: SAMN30608857
• BioSample: SAMN09202359

Other features

• G+C Content: 64.17%
• Coding Density: 89.88%
• Codon Table: 11
• N50: 71,760 bp
• Contigs: 64
• Largest Contig: 295,825 bp
• Assembly Length: 2,644,322 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Annotation by the IMG (Integrated Microbial Genomes) pipeline. Completeness and contamination estimates by CheckM v1.0.11.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014-07-02

Location

Lat Lon: 68.4725 S 78.188 E • 68.4725 S 78.1880 E

Toponym

Geo Loc Name: Antarctica: Ace Lake

Environment

Sample Type: metagenomic assembly

Isolation Source: saline lake

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: saline lake [ENVO:00000019]

Env Medium: saline water [ENVO:00002010]

Gold Ecosystem Classification: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

Other

Depth: 5m

Package

Ncbi Submission Package: MIMAG.water.6.0

Biosamplemodel: MIMAG.water • Metagenome or environmental

All retrieved samples

• SAMN30608857: Metagenome-assembled Genome sample from Regnicoccus frigidus MAG-AL1
• SAMN09202359: Saline water microbial communities from Ace Lake, Antarctica - #367

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Metadata retrieved 9 months ago