Keywords: GSC:MIxS;MIMAG:6.0

collection_date

2014-07-02

organism

Candidatus Regnicoccus frigidus MAG-AL1

env_broad_scale

aquatic biome [ENVO:00002030]

metagenomic

1

environmental-sample

1

env_local_scale

saline lake [ENVO:00000019]

metagenome-source

salt lake metagenome

isolate

MAG-AL1

NCBI submission package

MIMAG.water.6.0

depth

5m

derived_from

This BioSample is a metagenomic assembly obtained from the salt lake metagenome BioSample: SAMN09202359.

geo_loc_name

Antarctica: Ace Lake

env_medium

saline water [ENVO:00002010]

lat_lon

68.4725 S 78.188 E

isolation_source

saline lake

sample-type

metagenomic assembly

BioSampleModel

MIMAG.water

ENA-FIRST-PUBLIC

2022-09-14

ENA-LAST-UPDATE

2023-09-06

collection_date

2014-07-02

INSDC secondary accession

SRS3551952

NCBI submission package

Metagenome.environmental.1.0

organism

salt lake metagenome

geo_loc_name

Antarctica: Ace Lake

GOLD Ecosystem Classification

Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified

lat_lon

68.4725 S 78.1880 E

isolation_source

saline lake

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2018-05-12

ENA-LAST-UPDATE

2022-10-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX4396775" alias="JGI-SRA-100977" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX4396775</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-100977</EXTERNAL_ID>
    <SUBMITTER_ID namespace="">JGI-SRA-100977</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Antarctic Ace Lake metagenome #367</TITLE>
  <STUDY_REF accession="SRP154028">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP154028</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA467220</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS3551952">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS3551952</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN09202359</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>CGNGZ</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS3551952</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA740949</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4396775&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4396775&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>