Genome sc|0000804

Genomics

Accession

NCBI Assembly:GCA_028817335.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.23%
• Contamination: 0.54%
• Quality: 95.53

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 31.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN15855640
• BioSample: SAMN13943216

Other features

• G+C Content: 62.48%
• Coding Density: 91.96%
• Codon Table: 11
• N50: 29,525 bp
• Contigs: 102
• Largest Contig: 72,641 bp
• Assembly Length: 1,853,986 bp
• Ambiguous Assembly Fraction: 0.31%

Automated checks

Complete

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Last modified 11 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN15855640
• BioSample: SAMN13943216

Date

Collection Date: 2015-12-22

Location

Lat Lon: 18.832467 S 147.633250 E

Toponym

Geo Loc Name: Australia: Davies Reef

Environment

Sample Type: metagenomic assembly

Isolation Source: marine sponge reef biome

Env Broad Scale: coral reef

Env Local Scale: marine sponge reef biome

Env Medium: Tissue

Other

Host: Stylissa flabelliformis

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.host-associated.6.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN15855640: Microbe sample from Cyanobacteria bacterium MAG STY1_bin_7
• SAMN13943216: MIMS Environmental/Metagenome sample from sponge metagenome

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Metadata retrieved 12 months ago