JSON

Genome sc|0000081

Name

“Regnicoccus antarcticus”

Database

NCBI Assembly

Accession

GCF_000153045.1

Genomics

Accession
NCBI Assembly:GCF_000153045.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.18%
  • Contamination: 7.84%
  • Quality: 59.98
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
7.57 ×
Source
Other features
  • G+C Content: 60.68%
  • Coding Density: 90.09%
  • Codon Table: 11
  • N50: 1,792,002 bp
  • Contigs: 116
  • Largest Contig: 1,792,002 bp
  • Assembly Length: 3,280,236 bp
  • Ambiguous Assembly Fraction: 7.21%
Submitter comments
The estimated completeness and contamination were imported from GTDB. All other estimates were automatically generated by MiGA.

WB 5701 was sequenced using the AB 310 Genetic Analyzer in two libraries: SRX6198772 and SRX6198773. An exception for the low sequencing depth is requested on the basis of a high-quality assembly and a separate sequencing of small genomic fragments. Note that the contigs CH724160.1 (1,068,361 bp; 9.00 ×) and CH724159.1 (1,792,002 bp; 8.49 ×) capture the large majority of the assembly (87%).
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: Generic.1.0
Biosamplemodel: Generic
All retrieved samples
Metadata retrieved 9 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license