Genome sc|0000813


Database

NCBI Assembly

Accession

GCA_015278155.1

Genomics

Accession
NCBI Assembly:GCA_015278155.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.9%
  • Quality: 95.5
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 67.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
876.0 ×
Source
Other features
  • G+C Content: 41.0%
  • Coding Density: 89.8%
  • Codon Table: 11
  • N50: 409,614 bp
  • Contigs: 61
  • Largest Contig: 904,588 bp
  • Assembly Length: 4,501,926 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
DNA was used for 300-bp paired-end library preparation with Nextera XT DNA Sample Preparation Kit. The genome sequences were obtained by using MiSeq sequencer (Illumina). Sequences obtained were pre-processed using Prinseq software (v.0.20.4) to remove reads smaller than 35 bp and low-score sequences (Phred 30). Sequence reads were assembled using A5-Miseq software (v.20160825). The software CheckM was used to check for completeness and contamination. Gene prediction and functional annotation were performed using the Rapid Annotation using Subsystem Technology (RAST) program. 
Automated checks
Complete

Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-09-10
Location
Lat Lon: 22.58 S 42.02 W
Toponym
Geo Loc Name: Brazil: Rio de Janeiro, Arraial do Cabo
Environment
Sample Type: cell culture
Isolation Source: skin
Env Broad Scale: ocean
Env Local Scale: ocean
Env Medium: ocean
Other
Host: Sphoeroides spengleri
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples

Metadata retrieved 12 months ago


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