This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2107183 of study SRP060024.
- assembly software
- metaspadesv3.12.0
- environment (material)
- Wastewater
- collection date
- 2010-05-11
- sample derived from
- SAMN03794746
- geographic location (longitude)
- -62.05
- binning parameters
- Default
- contamination score
- 1.77
- ENA-FIRST-PUBLIC
- 2023-01-03
- ENA-LAST-UPDATE
- 2023-01-03
- completeness software
- CheckM
- environment (biome)
- Engineered
- environment (feature)
- Wastewater
- geographic location (country and/or sea)
- Argentina
- ENA-CHECKLIST
- ERC000047
- binning software
- CONCOCT v1.1
- organism
- uncultured Rubrivivax sp.
- assembly quality
- Many fragments with little to no review of assembly other than reporting of standard assembly statistics
- taxonomic identity marker
- multi-marker approach
- completeness score
- 93.34
- geographic location (latitude)
- -30.94
- scientific_name
- uncultured Rubrivivax sp.
- common name
- investigation type
- metagenome-assembled genome
- metagenomic source
- wastewater metagenome
- project name
- We performed massive shotgun-sequencing on activated sludge samples from four full-scale industrial and two municipal wastewater treatment plants, each sampled at two different times and with two technical replicates, to determine the functional potential of sludge metagenomes.
- sequencing method
- Illumina HiSeq 1500
- isolation_source
- wastewater metagenome