Genome sc|0000828

Genomics

Accession

NCBI Assembly:GCA_017986985.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.0%
• Contamination: 1.7%
• Quality: 83.5

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 71.0%)
• 0 23S rRNAs
• tRNAs for 17 amino acids

Sequencing depth

77.0 ×

Source

• BioSample: SAMN18119769

Other features

• G+C Content: 69.57%
• Coding Density: 91.76%
• Codon Table: 11
• N50: 35,338 bp
• Contigs: 192
• Largest Contig: 139,377 bp
• Assembly Length: 4,260,519 bp
• Ambiguous Assembly Fraction: 0.14%

Automated checks

Complete

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Last modified 11 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN18119769

Date

Not detected

Location

Lat Lon: 51.554117 N 9.916972 E

Toponym

Geo Loc Name: Germany: Goettingen

Environment

Sample Type: metagenome assembly

Isolation Source: wastewater

Env Broad Scale: ENVO:00002043

Env Local Scale: ENVO:00002044

Env Medium: ENVO:00002046

Other

Not detected

Package

Ncbi Submission Package: MIMAG.wastewater.5.0

Biosamplemodel: MIMAG.wastewater

Additional Accessions

SAMN10995914, SAMN14069858, SAMN14069874, SAMN14069891, SAMN14069908, SAMN14069925, SAMN14069942, SAMN14069959

All retrieved samples

• SAMN18119769: MAG bin Go_SlAct_bin_305 of sample SAMN18038647 generated with metaSPAdes and MetaBAT2

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Metadata retrieved 11 months ago