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cognitis nomina
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Genomes
sc|0000836
JSON
Genome sc|0000836
Name
“Metarubrivivax bioreactoricola”
Database
NCBI Assembly
Accession
GCA_020845645.1
Genomics
Accession
NCBI Assembly:
GCA_020845645.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.6%
Contamination:
3.3%
Quality:
79.1
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 20 amino acids
Sequencing depth
71.0 ×
Source
BioSample: SAMN16439782
Other features
G+C Content:
71.37%
Coding Density:
92.49%
Codon Table:
11
N50:
36,736 bp
Contigs:
242
Largest Contig:
121,379 bp
Assembly Length:
5,225,946 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN16439782
Date
Collection Date:
2015-11-11
Location
Lat Lon:
55.633 N 13.042 E
Toponym
Geo Loc Name:
Sweden: Sjolunda WWTP
Environment
Sample Type:
metagenomic assembly
Isolation Source:
Partial nitritation anammox bioreactor
Env Broad Scale:
waste water treatment plant
Env Local Scale:
biofilm [ENVO_00002034]
Env Medium:
waste water [
ENVO:00002001
]
Other
Not detected
Package
Ncbi Submission Package:
MIMAG.wastewater.5.0
Biosamplemodel:
MIMAG.wastewater
Additional Accessions
SAMN14350132, SAMN14350134, SAMN14350135, SAMN14350144, SAMN14350146, SAMN14350147, SAMN14350154, SAMN14350155, SAMN14350160, SAMN14350166, SAMN14350167, SAMN14350168, SAMN14350177, SAMN14350178, SAMN14350179, SAMN14350189, SAMN14350190 and SAMN14350191
All retrieved samples
SAMN16439782
: Uncultivated Rubrivivax sp. SJ371
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN16439782
×
Keywords: GSC:MIxS;MIMAG:5.0
collection_date
2015-11-11
reactor_type
PNA MBBR
organism
Rubrivivax sp.
env_broad_scale
waste water treatment plant
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the PNA biofilm metagenome BioSample: SAMN14350132, SAMN14350134, SAMN14350135, SAMN14350144, SAMN14350146, SAMN14350147, SAMN14350154, SAMN14350155, SAMN14350160, SAMN14350166, SAMN14350167, SAMN14350168, SAMN14350177, SAMN14350178, SAMN14350179, SAMN14350189, SAMN14350190 and SAMN14350191.
sample_type
metagenomic assembly
environmental-sample
1
env_local_scale
biofilm [ENVO_00002034]
metagenome-source
wastewater metagenome
isolate
SJ371
NCBI submission package
MIMAG.wastewater.5.0
geo_loc_name
Sweden: Sjolunda WWTP
env_medium
waste water [ENVO:00002001]
lat_lon
55.633 N 13.042 E
isolation_source
Partial nitritation anammox bioreactor
BioSampleModel
MIMAG.wastewater
ENA-FIRST-PUBLIC
2021-07-05
ENA-LAST-UPDATE
2021-07-05
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