Genome sc|0000087

Genomics

Accession

NCBI Assembly:GCA_003056265.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.5% (automated estimate: 96.2%)
• Contamination: 0.63% (automated estimate: 0.0%)
• Quality: 94.35 (automated estimate: 96.2)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 2)
• 1 23S rRNA (up to 100.0%) (automated estimate: 2)
• tRNAs for 19 amino acids (automated estimate: 20)

Sequencing depth

411.0 ×

Source

• BioSample: SAMN06648824

Other features

• G+C Content: 41.5% (automated estimate: 41.93%)
• Coding Density: 87.18%
• Codon Table: 11
• N50: 454,821 bp
• Contigs: 19
• Largest Contig: 644,031 bp
• Assembly Length: 1,808,184 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Transfer RNAs were detected with the Prokaryotic Genome Annotation Pipeline (PGAP). Rfam v.12.0 was used to identify rRNA genes. Due to the presence of intervening sequences, the 16S rRNA gene is longer in length than is typical and was not identified by PGAP. CheckM v.1.0.7 was used to estimate contamination and completion. 

Automated checks

Complete