JSON

Genome sc|0000092

Name

“Aquidulcis frankliniae”

Database

NCBI Assembly

Accession

GCA_009925905.1

Genomics

Accession
NCBI Assembly:GCA_009925905.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 85.8%
  • Contamination: 0.0%
  • Quality: 85.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
14.3 ×
Source
Other features
  • G+C Content: 61.83%
  • Coding Density: 95.46%
  • Codon Table: 11
  • N50: 15,495 bp
  • Contigs: 154
  • Largest Contig: 38,170 bp
  • Assembly Length: 1,233,219 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-09-07 • 2010-09-24 • 2013-09-08 • 2014-09-24 • 2015-10-04 • 2013-09-06 • 2014-09-27 • 2015-10-05 • 2012-08-05 • 2010-09-17 • 2012-08-01 • 2012-08-02
Location
Lat Lon: 29.719072 N 84.981177 W • 31.66294 N 85.062168 W • 32.664624 N 85.087393 W • 30.743083 N 84.858652 W • 32.933463 N 85.19634 W • 34.261117 N 83.950069 W
Toponym
Geo Loc Name: USA: Chattahoochee River • USA: Estuary Apalachicola • USA: Lake Eufaula • USA: Lake Harding • USA: Lake Seminole • USA: Lake Westpoint • USA: Lake Lanier
Environment
Sample Type: metagenomic assembly
Env Biome: lake • estuary
Isolation Source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014 • Apalachicola Estuary, USA • Lake Eufaula, USA • Lake Harding, USA • Lake Seminole, USA • Lake Westpoint, USA • Lake Lanier, USA
Other
Ph: 6.42 • 6.77 • 6.89 • 6 • 8.02 • 8.61 • 6.13 • 5.38 • 6.64 • 9.26 • 7.25 • 6.53 • 6.5 • 7.99 • 7.74 • 6.2
Temp: 18.26 • 29.02 C • 31.75 C • 30.04 C • 28.23 C • 23.42 C • 31.68 C • 25.84 C • 24.17 C • 30.37 C • 27.27 C • 23.63 C • 24.28 C • 26.36 C • 31.5 C • 29.31 C • 31.38 C • 31.18 C • 30.03 C • 31.16 C • 30.7 C • 32.26 C
Rel To Oxygen: aerobe
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 12 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license