Genome sc|0000096


Database

NCBI Assembly

Accession

SHOE01000000

Genomics

Accession
NCBI Assembly:SHOE01000000
Type
Isolate Genome
Estimated Quality Metrics
  • Contamination: 0.0%
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
Sequencing depth
96.0 ×
Source
Other features
  • G+C Content: 44.9%
Submitter comments
 Genomic annotation was carried out using Prokka. Genomic islands were predicted using IslandViewer 4. Genomic relatedness with type strains of members of the Harveyi clade was determined using OrthoANIu algorithm (http://www.ezbiocloud.net/tools/ani). Digital DDH values were calculated using genome–genome distance calculator (GGDC 2.1) applying Formula 2 (identities/HSP length). Average amino acid index (AAI) between SBOTS_Iso1 with type strains of Harveyi clade was determined using AAI-profler (http://ekhidna2.bioce nter.helsinki.f/AAI/). In silico phenotyping was performed using Traitar (https://github.com/hzi-bifo/traitar). Genome sequence of SBOTS_Iso1 and closest relative, V.alginolyticus ATCC17749T was aligned in progressiveMauve (http://gel.ahabs.wisc.edu/mauve). The genome of SBOTS_Iso1 was aligned into circular map using CGView server (http://stothard.afns.ualberta.ca/cgibin/cgview_server/cgview_server.pl). 
Automated checks
Failed: Cannot find ncbi:assembly:SHOE01000000

Last modified almost 2 years ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license