SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0000960
JSON
Genome sc|0000960
Database
NCBI Assembly
Accession
VBAK00000000
Genomics
Accession
NCBI Assembly:
VBAK00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
93.06%
(automated estimate: 93.4%)
Contamination:
4.2%
(automated estimate: 1.9%)
Quality:
72.06
(automated estimate: 83.9)
Ribosomal and transfer RNA genes
0 16S rRNAs
(automated estimate: 0)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 43 amino acids
(automated estimate: 21)
Sequencing depth
22.0 ×
Source
BioSample: SAMN11380290
Other features
G+C Content:
68.94%
(automated estimate: 68.93%)
Coding Density:
91.37%
Codon Table:
11
N50:
35,544 bp
Contigs:
200
Largest Contig:
127,315 bp
Assembly Length:
3,702,252 bp
Ambiguous Assembly Fraction:
0.00068%
Automated checks
Complete
Last modified
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
Search
×
Names
Publications
Authors
Subjects