SeqCode Registry
cognitis nomina
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Genomes
sc|0000966
JSON
Genome sc|0000966
Database
NCBI Assembly
Accession
LDXQ00000000
Genomics
Accession
NCBI Assembly:
LDXQ00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
84.41%
(automated estimate: 90.6%)
Contamination:
2.04%
(automated estimate: 1.9%)
Quality:
74.21
(automated estimate: 81.1)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 12.3%)
(automated estimate: 0)
1 23S rRNA (up to 88.0%)
(automated estimate: 1)
tRNAs for 36 amino acids
(automated estimate: 18)
Sequencing depth
34.0 ×
Source
BioSample: SAMN03462097
Other features
G+C Content:
68.26%
(automated estimate: 68.24%)
Coding Density:
92.33%
Codon Table:
11
N50:
28,046 bp
Contigs:
154
Largest Contig:
108,837 bp
Assembly Length:
2,535,673 bp
Ambiguous Assembly Fraction:
0.021%
Automated checks
Complete
Last modified
11 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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