SeqCode Registry
cognitis nomina
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Genomes
sc|0000972
JSON
Genome sc|0000972
Database
INSDC Nucleotide
Accession
JAVKKI000000000
Genomics
Accession
INSDC Nucleotide:
JAVKKI000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.64%
(automated estimate: 91.5%)
Contamination:
0.19%
(automated estimate: 0.9%)
Quality:
89.69
(automated estimate: 87.0)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN35168791
Other features
G+C Content:
72.38%
(automated estimate: 72.38%)
Coding Density:
93.84%
Codon Table:
11
N50:
36,358 bp
Contigs:
110
Largest Contig:
116,278 bp
Assembly Length:
2,891,149 bp
Ambiguous Assembly Fraction:
0.00035%
Automated checks
Complete
Last modified
10 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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