Genome sc|0000974

Database

INSDC Nucleotide

Accession

JAVKIJ000000000

Genomics

Accession

INSDC Nucleotide:JAVKIJ000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 84.52% (automated estimate: 83.0%)
Contamination: 2.22% (automated estimate: 1.9%)
Quality: 73.42 (automated estimate: 73.5)

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
0 23S rRNAs
tRNAs for 17 amino acids

Sequencing depth

100.0 ×

Source

Other features

G+C Content: 68.68% (automated estimate: 68.68%)
Coding Density: 93.97%
Codon Table: 11
N50: 34,603 bp
Contigs: 138
Largest Contig: 132,502 bp
Assembly Length: 3,115,143 bp
Ambiguous Assembly Fraction: 0.00032%

Automated checks

Complete

Last modified 8 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2018-03

Location

Lat Lon: 25.44 N 98.46 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, JZ-2 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • JZ-2

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

Metadata retrieved 8 months ago

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