Genome sc|0000977

Genomics

Accession

INSDC Nucleotide:JAVKJD000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 88.89% (automated estimate: 93.4%)
• Contamination: 0.19% (automated estimate: 1.9%)
• Quality: 87.94 (automated estimate: 83.9)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 45.0%)
• tRNAs for 21 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN35168760
• BioSample: SAMN35165533

Other features

• G+C Content: 71.01% (automated estimate: 71.01%)
• Coding Density: 92.76%
• Codon Table: 11
• N50: 76,416 bp
• Contigs: 67
• Largest Contig: 388,819 bp
• Assembly Length: 3,646,875 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 8 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN35168760
• BioSample: SAMN35165533

Date

Collection Date: 2019-12

Location

Lat Lon: 25.44 N 98.46 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, JZ-2 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • JZ-2

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN35168760: MIMAG Metagenome-assembled Genome sample from Armatimonadota bacterium
• SAMN35165533: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved 8 months ago