JSON

Genome sc|0000979

Name

“Humicultor riflensis”

Database

INSDC Nucleotide

Accession

LDXQ00000000

Genomics

Accession
INSDC Nucleotide:LDXQ00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 84.41%
  • Contamination: 2.04%
  • Quality: 74.21
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
34.0 ×
Source
Other features
  • G+C Content: 68.26%
  • Coding Density: 92.33%
  • Codon Table: 11
  • N50: 28,046 bp
  • Contigs: 154
  • Largest Contig: 108,837 bp
  • Assembly Length: 2,535,673 bp
  • Ambiguous Assembly Fraction: 0.021%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-07-20
Location
Lat Lon: 39.53 N 107.78 W
Toponym
Geo Loc Name: USA: Rifle, Colorado
Environment
Isolation Source: sediment at 5m depth
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 2 months ago


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