JSON

Genome sc|0000979

Database

INSDC Nucleotide

Accession

LDXQ00000000

Genomics

Accession
INSDC Nucleotide:LDXQ00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 84.41% (automated estimate: 90.6%)
  • Contamination: 2.04% (automated estimate: 1.9%)
  • Quality: 74.21 (automated estimate: 81.1)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
34.0 ×
Source
Other features
  • G+C Content: 68.26% (automated estimate: 68.24%)
  • Coding Density: 92.33%
  • Codon Table: 11
  • N50: 28,046 bp
  • Contigs: 154
  • Largest Contig: 108,837 bp
  • Assembly Length: 2,535,673 bp
  • Ambiguous Assembly Fraction: 0.021%
Automated checks
Complete
Last modified 10 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-07-20
Location
Lat Lon: 39.53 N 107.78 W
Toponym
Geo Loc Name: USA: Rifle, Colorado
Environment
Isolation Source: sediment at 5m depth
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 8 months ago


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