JSON

Genome sc|0000980

Database

INSDC Nucleotide

Accession

VBAP00000000

Genomics

Accession
INSDC Nucleotide:VBAP00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.51% (automated estimate: 91.5%)
  • Contamination: 4.81% (automated estimate: 4.7%)
  • Quality: 65.46 (automated estimate: 68.0)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 64.87% (automated estimate: 64.81%)
  • Coding Density: 90.14%
  • Codon Table: 11
  • N50: 26,552 bp
  • Contigs: 175
  • Largest Contig: 153,713 bp
  • Assembly Length: 2,926,019 bp
  • Ambiguous Assembly Fraction: 0.083%
Automated checks
Complete
Last modified 10 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-09-03
Location
Lat Lon: 39.74 N 123.63 W
Toponym
Geo Loc Name: USA: Angelo Coast Range Reserve, CA
Environment
Sample Type: metagenomic assembly
Isolation Source: temperate grassland biome
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 8 months ago


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