JSON

Genome sc|0000981

Database

INSDC Nucleotide

Accession

VBAL00000000

Genomics

Accession
INSDC Nucleotide:VBAL00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 81.79% (automated estimate: 86.8%)
  • Contamination: 3.55% (automated estimate: 1.9%)
  • Quality: 64.04 (automated estimate: 77.3)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 64.76% (automated estimate: 64.43%)
  • Coding Density: 89.81%
  • Codon Table: 11
  • N50: 17,989 bp
  • Contigs: 325
  • Largest Contig: 89,534 bp
  • Assembly Length: 2,943,780 bp
  • Ambiguous Assembly Fraction: 0.5%
Automated checks
Complete
Last modified 10 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-09-03
Location
Lat Lon: 39.74 N 123.63 W
Toponym
Geo Loc Name: USA: Angelo Coast Range Reserve, CA
Environment
Sample Type: metagenomic assembly
Isolation Source: temperate grassland biome
Other
Not detected
Package
Ncbi Package: Microbe.1.0
All retrieved samples
Metadata retrieved 9 months ago


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