SeqCode Registry
cognitis nomina
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Genomes
sc|0000985
JSON
Genome sc|0000985
Database
INSDC Nucleotide
Accession
DSKC00000000
Genomics
Accession
INSDC Nucleotide:
DSKC00000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.37%
Contamination:
1.11%
Quality:
89.82
Ribosomal and transfer RNA genes
0 16S rRNAs
2 23S rRNAs (up to 100.0%)
tRNAs for 45 amino acids
Sequencing depth
30.2 ×
Source
BioSample: SAMN09639312
Other features
G+C Content:
68.59%
Automated checks
Failed: Cannot find ncbi:nuccore:DSKC00000000
Last modified
10 months ago
Sample Metadata
BioSample entries
BioSample: SAMN09639312
Date
Collection Date:
2012-09-26
Location
Lat Lon:
49.9543 N 116.5155 W
Toponym
Geo Loc Name:
Canada: British Columbia
Environment
Sample Type:
metagenomic assembly
Isolation Source:
hot spring sediment
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN09639312
: Microbe sample from Bacillota bacterium
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN09639312
×
subsource_note
Metagenome-assembled genome binned from sequencing reads available in SRR5580900
collection_date
2012-09-26
INSDC secondary accession
SRS3561171
organism
Bacillota bacterium
metagenomic
true
sample_type
metagenomic assembly
environmental-sample
true
metagenome-source
sediment metagenome
contamination_estimated
1.11
isolate
SpSt-238
NCBI submission package
Microbe.1.0
genome_coverage
30.22
mapping_method_and_version
Bowtie 2 v2.2.8
geo_loc_name
Canada: British Columbia
assembly_method_and_version
DOE-JGI IMG deposited assembly (IMG Genome ID: 3300006808)
lat_lon
49.9543 N 116.5155 W
completeness_estimated
95.37
quality_assessment_method_and_version
CheckM v1.0.7
isolation_source
hot spring sediment
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2019-01-01
ENA-LAST-UPDATE
2023-03-13
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