Candidatus Biekeibacterium resiliens


This name was automatically created through literature mining, and it currently has no standing or validity.
Authors of original publications are encouraged to claim the name and submit it for validation
Login or Signup to claim this name.

Citation

Formal styling
Candidatus Biekeibacterium resiliens” Dávila Santiago et al., 2022
Effective publication
Dávila Santiago et al., 2022
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:23395

Nomenclature

Rank
Species
Syllabication
re.si'li.ens
Etymology
L. part. adj. resiliens, rebounding, named after its ability to respond (enriching in abundance and function) after an environmental perturbation

Taxonomy

Description
Ca. Biekeibacterium resiliens” appears to be a chemolithoautotrophic bacterial population capable of carbon fixation and can probably oxidize thiosulfate to sulfate via the SOX complex. The presence of SOX complex also indicates that oxygen is the preferred electron acceptor, but if there are oxygen limitations, nitrate, iron or organic matter could be used instead as alternative electron acceptors based on hallmark genes identified in the genome for these pathways (Kuever, Rainey & Widdel, 2005). “Ca. Biekeibacterium resiliens” suggests to be (1) capable of glycolysis and carbon fixation, (2) potential for thiosulfate oxidation through the SOX complex, (3) non-nitrogen fixer, (4) non-photosynthetic. “Ca. Biekeibacterium resiliens” appears to be capable of thiosulfate oxidation (100% pathway completeness), nitrate/nitrate transport (100% completeness), NarX-NarL two component regulatory system (100% completeness), cytochrome c oxidase for ATP synthesis (100% completeness), assimilatory nitrate reduction (50% completeness), dissimilatory nitrate reduction (50% completeness). In addition, potential for carrying a xenobiotic reductase B (XenB) and oxygen nitroreductase (nfsB), which indicate capacity for biodegradation of explosives, and copper export (copA). The latter suggests that “Ca. Biekeibacterium resiliens” is a genetically and phenotypically versatile bacterium that is enriched after exposure to organic pollutants such as explosives.
Notes
The type genome BioSample is SAMN16502674 but no genome accession is given in Dávila Santiago et al 2021.
Classification
Candidatus Biekeibacteriaceae » Candidatus Biekeibacterium » Candidatus Biekeibacterium resiliens
Parent
Candidatus Biekeibacterium

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Excubia bot almost 3 years ago

Publications
1

Citation Title
Dávila Santiago et al., 2022, Systematic and Applied Microbiology Microbial diversity in a military impacted lagoon (Vieques, Puerto Rico) and description of “Candidatus Biekeibacterium resiliens” gen. nov., sp. nov. comprising a new bacterial family
Effective publication



© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license