Pumilibacter murisT


Citation

Formal styling
Pumilibacter murisT Afrizal et al. 2024
Effective publication
Afrizal et al., 2022
SeqCode status
Valid (ICNP)
Canonical URL
https://seqco.de/i:23517

Nomenclature

Rank
Species
Syllabication
mu.ris
Etymology
L. gen. n. muris, of a mouse
Nomenclatural type
Strain: ATCC TSD-349 = CLA-AA-M08 = JCM 35011
Nomenclatural status
Validly published under the ICNP

Taxonomy

Description
The species has all features of the genus. Additional phylogenetic relatives based on 16S rRNA gene sequences are Xylanivirga thermophila (83.77%), Ruminiclostridium josui (83.68%), and Hespellia porcina (83.57%). Separation from the other novel species within this genus represented by strain CLA-AA-M10 (described below) was confirmed via an ANI value of 76.4% and GGDC value of 25% between the two genomes. Cells are very small and spherical (diameter: 0.3-0.5 µm) when grown on YCFA agar under anaerobic conditions for 7 days. In total, 121 CAZymes were identified within the genome of the type strain and only starch was predicted to be utilised as a carbon source. KEGG analysis identified pathways for the production of acetate from acetyl-CoA (EC:2.3.1.8, 2.7.2.1), propionate from propanoyl-CoA (EC:2.3.1.8, 2.7.2.1), L-cysteine and acetate from sulfide and L-serine (EC:2.3.1.30, 2.5.1.47), and L-glutamate from ammonia via L-glutamine (EC:6.3.1.2, 1.4.1.-). No antibiotic resistance genes were identified within the genome. Ecological analysis suggested that the species is most prevalent within amplicon datasets from the mouse gut (32.8%). The type strain is CLA-AA-M08T. Its G+C content of genomic DNA is 46.81%. It was isolated from a filtered (0.45 µm) caecal suspension of an SPF mouse. 
Classification
Bacteria » Bacillota » Clostridia » Eubacteriales » Pumilibacteraceae » Pumilibacter » Pumilibacter murisT
Parent
Pumilibacter ncbigtdb
Taxonomic status
Correct name

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Afrizal, Afrizal over 2 years ago
Submitted by
Afrizal, Afrizal about 1 year ago

Publications
1

Citation Title
Afrizal et al., 2022, Cell Host & Microbe Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities
Effective publication



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