Pumilibacter intestinalis


Citation

Formal styling
Pumilibacter intestinalis Afrizal et al. 2024
Effective publication
Afrizal et al., 2022
SeqCode status
Valid (ICNP)
Canonical URL
https://seqco.de/i:23520

Nomenclature

Rank
Species
Syllabication
in.tes.ti.na.lis
Etymology
N.L. masc. adj. intestinalis, pertaining to the intestine
Nomenclatural type
Strain: ATCC TSD-350 = CLA-AA-M10 = JCM 35012
Nomenclatural status
Validly published under the ICNP

Taxonomy

Description
The species has all features of the genus. Additional phylogenetic relatives based on 16S rRNA gene sequences are Ruminiclostridium josui (84.32%), Ruminiclostridium cellulolyticum (84.11%), and Vallitalea guaymasensis (83.95%). Assignment to the genus Pumilibacter was confirmed by a POCP value of 69.7% between the genome of the type strain and that of the type species of the genus, Pumilibacter muris. Cells are very small and coccoid with a diameter of ca. 0.4-0.6 µm when grown on YCFA or mGAM blood agar under anaerobic conditions for 7 days. In total, 155 CAZymes were identified within the genome and only starch was predicted to be utilised as a carbon source. KEGG analysis identified pathways for the production of acetate from acetyl-CoA (EC:2.3.1.8, 2.7.2.1), propionate from propanoyl-CoA (EC:2.3.1.8, 2.7.2.1), L-cysteine and acetate from sulfide and L-serine (EC:2.3.1.30, 2.5.1.47), and L-glutamate from ammonia via L-glutamine (EC:6.3.1.2, 1.4.1.-). Antibiotic resistance was predicted based on the detection of tetracycline-resistant ribosomal protection protein. Ecological analysis suggested that the species is most prevalent within amplicon datasets from the mouse gut (39.9%). The type strain is CLA-AA-M10T. Its G+C content of genomic DNA is 49.6%. It was isolated from a filtered (0.45 µm) caecal suspension of an SPF mouse. 
Classification
Bacteria » Bacillota » Clostridia » Eubacteriales » Pumilibacteraceae » Pumilibacter » Pumilibacter intestinalis
Parent
Pumilibacter ncbigtdb
Taxonomic status
Correct name

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Afrizal, Afrizal over 2 years ago
Submitted by
Afrizal, Afrizal about 1 year ago
Curators

Publications
1

Citation Title
Afrizal et al., 2022, Cell Host & Microbe Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities
Effective publication



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