Roseiconus lacunae


Citation

Formal styling
Roseiconus lacunae Kumar et al., 2021 (valid 2023)
Effective publication
Kumar et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:v04mpu86 (validated)
Canonical URL
https://seqco.de/i:32094

Nomenclature

Rank
Species
Syllabication
la.cu'nae
Etymology
L. gen. n. lacunae, of a lagoon
Nomenclatural type
NCBI Assembly: GCA_008312935.1
Reference strain
JC635 = KCTC 72164 = NBRC 113875
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Colour of chemotrophically grown culture is light pink. Cells are motile with lophotrichous flagella. NaCl is obligate for growth and tolerates up to 5% (w/v) with optimum growth at 3%. Optimum pH and temperature for growth are 8.0 (range 6.0–9.0) and 30 ºC (range 10–35 °C), respectively. Growth factors are not required for growth. D-glucose, fructose, mannose, maltose, sucrose, starch, D-xylose, lactose, D-galactose and rhamnose are good carbon sources/electron donors for supporting its growth. Ammonium sulphate, peptone, L-serine, DL-threonine, L-leucine and DL-alanine, L-isoleucine, L-phenylalanine, L-glutamic acid and L-aspartic acid are utilized as nitrogen sources for its growth. Major fatty acids are C18:1ω9c, C16:0 and anteiso-C13:0. Minor fatty acids include C10:0 3-OH, C12:0, C11:0 3-OH, C14:0, anteiso-C15:0, C16:1ω7c/C16:1ω6c, C17:0, C17:1ω8c, anteiso-C17:0, C18:0, C18:1ω7c/C18:1ω6c, anteiso-C12:0, C16:0 3-OH, anteiso-C16:0, anteiso-C17:1 A and C18:3ω6,9,12c. Polyamines are 1,2-diaminopropane, cadaverine, spermidine, putrescine, and two unidentified polyamines. Polar lipids are phosphatidylethanolamine (PE), phosphatidylcholine (PC), unidentified amino lipids (AL 1), and one unidentified lipid (L1). Genomic DNA G + C content is 55.1 mol%. The reference strain JC635 (= KCTC 72164 = NBRC 113875) was isolated from Chilika lagoon, India (19° 51' 15N, 85° 21' 19E).
Classification
Bacteria » Planctomycetota » Planctomycetia » Pirellulales » Pirellulaceae » Roseiconus » Roseiconus lacunae
Parent
Roseiconus ncbi assigned in Kumar et al., 2021

Genomics

Accession
NCBI Assembly:GCA_008312935.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 93.4%
  • Contamination: 0.9%
  • Quality: 88.9
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 55.13%
  • Coding Density: 86.85%
  • Codon Table: 11
  • N50: 466,683 bp
  • Contigs: 97
  • Largest Contig: 1,732,674 bp
  • Assembly Length: 7,949,947 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Van Lill, Melandre over 1 year ago
Submitted by
Rodriguez-R, Luis M about 1 year ago
Curators
Endorsed by
Palmer, Marike about 1 year ago
Validated by
Chuvochina, Maria about 1 year ago
Date of priority
2023-08-08 03:09 PM (UTC)

Publications
1

Citation Title
Kumar et al., 2021, Archives of Microbiology Descriptions of Roseiconus nitratireducens gen. nov. sp. nov. and Roseiconus lacunae sp. nov
Effective publication
Assigned this taxon



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