Saelkia tenebricolaTs


Citation

Formal styling
Saelkia tenebricolaTs Williams et al., 2021 (valid 2024)
Effective publication
Williams et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:2rggbgyb (validated)
Canonical URL
https://seqco.de/i:33287

Nomenclature

Rank
Species
Syllabication
ten.e'bri.co.la
Etymology
L. fem. n. tenebra, darkness; L. n. suff. -cola, inhabitant; N.L. fem. n. tenebricola, a dweller of the dark
Nomenclatural type
NCBI Assembly: GCA_030765145.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the type for the genus Saelkia. The description for this species is derived from Williams et al., 2021, and supplemented with additional information. Genome predictions indicate that this species is likely heterotrophic, with an incomplete horse-shoe type TCA cycle, fermentation of glucose to acetyl-CoA through the EMP pathway, and codes for proteases and peptidases to degrade proteins to amino acids, simple sugar ABC transporters and glycoside hydrolases. The genome also codes for a V-type ATPase and Rnf complex for ATP synthesis, and a Group 4g [NiFe] hydrogenase. All genes required for the production of a Type-4a pilus and conductive pili are encoded by the genome. The nomenclatural type for this species is the genome 3300035698_749.
Classification
Incertae sedis (Bacteria) » “Kaelpiales” » “Kaelpiaceae” » Saelkia » Saelkia tenebricolaTs
Parent
Saelkia gtdb

Genomics

Accession
NCBI Assembly:GCA_030765145.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.21%
  • Contamination: 1.79%
  • Quality: 89.26
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 27.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
28.0 ×
Source
Other features
  • G+C Content: 35.21%
  • Coding Density: 94.22%
  • Codon Table: 11
  • N50: 42,524 bp
  • Contigs: 88
  • Largest Contig: 214,816 bp
  • Assembly Length: 1,631,258 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Allen, Michelle 12 months ago
Submitted by
Allen, Michelle 2 months ago
Curators
Validated by
Palmer, Marike 18 days ago
Date of priority
2024-09-04 06:09 AM (UTC)

Publications
1

Citation Title
Williams et al., 2021, Frontiers in Microbiology Shedding Light on Microbial “Dark Matter”: Insights Into Novel Cloacimonadota and Omnitrophota From an Antarctic Lake
Effective publication



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