Zapsychrus exiliTs


Citation

Formal styling
Zapsychrus exiliTs Williams et al., 2021 (valid 2024)
Effective publication
Williams et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:2rggbgyb (validated)
Canonical URL
https://seqco.de/i:33302

Nomenclature

Rank
Species
Syllabication
ex.i'l.i
Etymology
L. gen. n. exili, of an exile, refugee; referring to the isolation of Ace Lake, cut off from the Southern Ocean.
Nomenclatural type
NCBI Assembly: GCA_030765585.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Zapsychrus. The estimated genome size is 2.1 Mb. Based on the description in Williams et al., 2021, an incomplete horse-shoe type TCA cycle is encoded by this genome, and this species is predicted to be heterotrophic. Glucose is predicted to be fermented through the EMP pathway. A Group 3d [NiFe] hydrogenase is predicted from the genome, and a V-type ATPase, respiratory F-type ATPase and Rnf complex for ATP synthesis is present. A reversible acetyl-CoA synthetase may be indicative of acetogenesis in this species. A conductive pilin is also encoded by the genome. All genes for a tight-adherence complex (Tad) and Type-4a pilus are present in the genome. The nomenclatural type for the species is the genome 3300035698_1555, recovered from metagenomic sampling and sequencing of Ace Lake, Antarctica. 
Classification
Bacteria » Omnitrophota » “Velamenicoccia” » “Zapsychrales” » “Zapsychraceae” » Zapsychrus » Zapsychrus exiliTs
Parent
Zapsychrus gtdb

Genomics

Accession
NCBI Assembly:GCA_030765585.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.43%
  • Contamination: 1.79%
  • Quality: 87.48
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 27.0%)
  • 1 23S rRNA (up to 36.0%)
  • tRNAs for 19 amino acids
Sequencing depth
11.0 ×
Source
Other features
  • G+C Content: 34.04%
  • Coding Density: 91.07%
  • Codon Table: 11
  • N50: 27,791 bp
  • Contigs: 129
  • Largest Contig: 115,475 bp
  • Assembly Length: 2,044,061 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete
See additional details

Last modified 5 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Allen, Michelle about 1 year ago
Submitted by
Allen, Michelle 2 months ago
Curators
Validated by
Palmer, Marike 30 days ago
Date of priority
2024-09-04 06:09 AM (UTC)

Publications
1

Citation Title
Williams et al., 2021, Frontiers in Microbiology Shedding Light on Microbial “Dark Matter”: Insights Into Novel Cloacimonadota and Omnitrophota From an Antarctic Lake
Effective publication



© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license