Parasynechococcus marisnigriTs


Citation

Formal styling
Parasynechococcus marisnigriTs corrig. Coutinho et al., 2016 (valid 2024)
Effective publication
Coutinho et al., 2016
Corrigendum
In SeqCode Registry from “Parasynechococcus marenigrum” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:rk53ahu7 (validated)
Canonical URL
https://seqco.de/i:33333

Nomenclature

Rank
Species
Syllabication
ma.ris.ni'gri
Etymology
L. neut. n. mare, sea; L. neut. adj. nigrum, black; N.L. gen. n. marisnigri, referring to the increased abundance of this organism at the Black Sea province
Nomenclatural type
NCBI Assembly: GCF_000195975.1
Reference strain
WH 8102
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The phycobilisome pigmentation of this strain belongs to class 3c. Bacteriocin gene clusters detected in this genome belong to classes I, U. Reference strain is WH8102, which has a genome of 2.43 Mbp with a GC content of 59.4 % that encodes 2752 genes that include 365 diagnostic orthologous groups. Affiliation to the species can be determined by the presence of Ammonium transporter, Ferric iron ABC transporter: ATP-binding protein, Ferric iron ABC transporter: iron-binding protein, Ferric iron ABC transporter: permease protein, GlnN, NifS, NifU, Nitrate ABC transporter, Nitrate/Nitrite transporter, UreD, UreE, UreF, UreG, UrtA, UrtB, UrtC, UrtD, UrtE, phnE, phoB, phoH, phoR, pstA, pstB, pstC, pstS
Classification
Bacteria » Cyanobacteriota » Cyanophyceae » “Synechococcales” » Synechococcaceae » Parasynechococcus » Parasynechococcus marisnigriTs
Parent
Parasynechococcus ncbigtdb
Pseudonyms
  • Parasynechococcus marenigrum (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCF_000195975.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.36%
  • Contamination: 0.0%
  • Quality: 99.36
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
16.0 ×
Source
Other features
  • G+C Content: 59.5%
  • Coding Density: 90.35%
  • Codon Table: 11
  • N50: 2,434,428 bp
  • Contigs: 1
  • Largest Contig: 2,434,428 bp
  • Assembly Length: 2,434,428 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM analysis was used for completeness and contamination estimates
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Kamyshnikova, Asia 11 months ago
Submitted by
Palmer, Marike 4 months ago
Curators
Validated by
Rodriguez-R, Luis M about 1 month ago
Date of priority
2024-07-15 01:05 PM (UTC)

Publications
1

Citation Title
Coutinho et al., 2016, Archives of Microbiology Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features
Effective publication



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