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Eutrophocola salsuginisTs

Citation

Formal styling
Eutrophocola salsuginisTs Prabhu et al., 2024
Effective publication
Prabhu et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:sfdglxu8 (validated)
Canonical URL
https://seqco.de/i:46744

Nomenclature

Rank
Species
Syllabication
sal.su'gi.nis
Etymology
L. gen. n. salsuginis, of the brackish water
Nomenclatural type
NCBI Assembly: GCA_038147195.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Inferred to break down a Chitin and Pectin, as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Carries genes for nitrate uptake (NRT2) and anaerobic dissimilatory nitrate reduction (nirBD). Capable of sulfate assimilation (cys), phosphorus uptake and regulation (pho, pst) and polyphosphate accumulation (ppk1). Likely performing osmoregulation using trk1 (K+ transporter) and proXV (Glycine betaine) and inferred to be motile (fliGMN, motAB gene). Based on the genome reporting standards for MAGs , the estimated completeness was 93.58%, contamination 1.79%, and the presence of the 5S (106bp), 16S (1,551 bp), and 23S (2,877 bp) rRNA gene and 42 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 3Mbps.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Pseudomonadales » Pseudohongiellaceae » Eutrophocola » Eutrophocola salsuginisTs
Parent
Eutrophocola

Genomics

Accession
NCBI Assembly:GCA_038147195.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.58%
  • Contamination: 1.79%
  • Quality: 84.63
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 54.5%
  • Coding Density: 89.06%
  • Codon Table: 11
  • N50: 2,601,762 bp
  • Contigs: 6
  • Largest Contig: 2,601,762 bp
  • Assembly Length: 2,982,448 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 7 months ago
Submitted by
Chuvochina, Maria 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 4 months ago
Date of priority
2024-08-12 01:22 AM (UTC)

Publications
1

Citation Title
Prabhu et al., 2024, ISME Communications Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary
Effective publication


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