SeqCode Registry
Register List https://seqco.de/r:-kiq_w89 [2024]

Register list for 16 new names including Andeanibacterium gen. nov.

Submitted by Díaz-García, Laura

Genus Andeanibacterium

Etymology
[An.de.a.ni.bac.te'ri.um] N.L. masc. adj. andeanus, pertaining to the Andes; N.L. neut. n. bacterium, small rod; N.L. neut. n. Andeanibacterium, Andean rod
Nomenclatural type
Species Andeanibacterium colombienseTs
Description
A genus established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction, and phylogenomic analyses and is classified as a member of the Sphingomonadaceae family. Genomic metrics include ANI (79.88), AAI (61.59) and dDDH d4 (20.1). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 54 CAZymes, 15 of them involved in lignocellulose degradation. In addition, putative genes for PET hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Sphingomonadales » Sphingomonadaceae » Andeanibacterium
References
Effective publication: Díaz-García et al., 2024 [1]

Species Microbacterium colombiense

Etymology
[co.lom.bi.en'se.] N.L. neut. adj. colombiense, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119308.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_1911. Genomic metrics include ANI (85.9), AAI (81.1) and dDDH d4 (28.3). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 82 CAZymes, 30 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Actinomycetota » Actinomycetes » Micrococcales » Microbacteriaceae » Microbacterium » Microbacterium colombiense
References
Effective publication: Díaz-García et al., 2024 [1]

Species Pseudomonas colombiensis

Etymology
[co.lom.bi.en'sis] N.L. fem. adj. colombiensis, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119322.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_425. Genomic metrics include ANI (86.68), AAI (86.03) and dDDH d4 (29.3). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 103 CAZymes, 19 of them involved in lignocellulose degradation. In addition, putative genes for PUR hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Pseudomonadales » Pseudomonadaceae » Pseudomonas » Pseudomonas colombiensis
References
Effective publication: Díaz-García et al., 2024 [1]

Species Sphingomonas colombiensis

Etymology
[co.lom.bi.en'sis] N.L. fem. adj. colombiensis, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119315.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_27. Genomic metrics include ANI (85.46), AAI (66.97) and dDDH d4 (20.8). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 59 CAZymes, 10 of them involved in lignocellulose degradation. In addition, putative genes for PET hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Sphingomonadales » Sphingomonadaceae » Sphingomonas » Sphingomonas colombiensis
References
Effective publication: Díaz-García et al., 2024 [1]

Species Sphingomonas phytovorans

Etymology
[phy.to.vo'rans.] Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119314.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_3606. Genomic metrics include ANI (80.99), AAI (80.97) and dDDH d4 (22.2). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 95 CAZymes, 29 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Sphingomonadales » Sphingomonadaceae » Sphingomonas » Sphingomonas phytovorans
References
Effective publication: Díaz-García et al., 2024 [1]

Species Microbacterium phytovorans

Etymology
[phy.to.vo'rans.] Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. neut. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119321.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_4610. Genomic metrics include ANI (82.28), AAI (73.07) and dDDH d4 (21.5). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 74 CAZymes, 31 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Actinomycetota » Actinomycetes » Micrococcales » Microbacteriaceae » Microbacterium » Microbacterium phytovorans
References
Effective publication: Díaz-García et al., 2024 [1]

Species Pseudomonas phytovorans

Etymology
[phy.to.vo'rans.] Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119325.1 Ts
Description
A genus established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_876. Genomic metrics include ANI (92.18), AAI (95) and dDDH d4 (47). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 87 CAZymes, 16 of them involved in lignocellulose degradation. In addition, putative genes for PUR hydrolysis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Pseudomonadales » Pseudomonadaceae » Pseudomonas » Pseudomonas phytovorans
References
Effective publication: Díaz-García et al., 2024 [1]

Species Pedobacter colombiensis

Etymology
[co.lom.bi.en'sis] N.L. masc. adj. colombiensis, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119313.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_3858. Genomic metrics include ANI (81.7), AAI (81.02) and dDDH d4 (29.6). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 254 CAZymes, 63 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Bacteroidota » Sphingobacteriia » Sphingobacteriales » Sphingobacteriaceae » Pedobacter » Pedobacter colombiensis
References
Effective publication: Díaz-García et al., 2024 [1]

Species Kaistia colombiensis

Etymology
[co.lom.bi.en'sis] N.L. fem. adj. colombiensis, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119318.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_2176. Genomic metrics include ANI (86.41), AAI (77.29) and dDDH d4 (28.1). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 95 CAZymes, 18 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Kaistiaceae » Kaistia » Kaistia colombiensis
References
Effective publication: Díaz-García et al., 2024 [1]

Species Chryseobacterium colombiense

Etymology
[co.lom.bi.en'se.] N.L. neut. adj. colombiense, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119310.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_1654. Genomic metrics include ANI (88.96), AAI (95) and dDDH d4 (36.2). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 139 CAZymes, 41 of them involved in lignocellulose degradation. In addition, putative genes for PUR hydrolisis were found within the MAG.
Classification
Bacteria » Bacteroidota » Flavobacteriia » Flavobacteriales » Weeksellaceae » Chryseobacterium » Chryseobacterium colombiense
References
Effective publication: Díaz-García et al., 2024 [1]

Species Andeanibacterium colombienseTs

Etymology
[co.lom.bi.en'se.] N.L. neut. adj. colombiense, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119316.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction, and phylogenomic analyses and is classified as a member of the Sphingomonadaceae family. The type species of the genus is Andeanibacterium colombiense. Genomic metrics include ANI (79.88), AAI (61.59) and dDDH d4 (20.1). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 54 CAZymes, 15 of them involved in lignocellulose degradation. In addition, putative genes for PET hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Sphingomonadales » Sphingomonadaceae » Andeanibacterium » Andeanibacterium colombienseTs
References
Effective publication: Díaz-García et al., 2024 [1]

Species Pseudobacter hemicellulosilyticus

Etymology
[he.mi.cel.lu.lo.si.ly'ti.cus] N.L. neut. n. hemicellulosum, hemicellulose; N.L. masc. adj. lyticus, able to dissolve; N.L. masc. adj. hemicellulosilyticus, hemicellulose dissolving
Nomenclatural type
INSDC Nucleotide: CP119311.1 Ts
Description
The species is established on the basis of MiGA taxonomic novelty analysis, the taxonomic placement using maximum likelihood trees with 120 bacterial marker genes (bac120) and and the type material is the genome MAG_7. Genomic metrics include ANI (69.21), AAI (65.96) and dDDH d4 (22.1). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 237 CAZymes, 99 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Bacteroidota » Chitinophagia » Chitinophagales » Chitinophagaceae » Pseudobacter » Pseudobacter hemicellulosilyticus
References
Effective publication: Díaz-García et al., 2024 [1]

Species Devosia phytovorans

Etymology
[phy.to.vo'rans.] Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119312.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_4196. Genomic metrics include ANI (84.84), AAI (74.37) and dDDH d4 (23.5). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 90 CAZymes, 17 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Devosiaceae » Devosia » Devosia phytovorans
References
Effective publication: Díaz-García et al., 2024 [1]

Species Brevundimonas colombiensis

Etymology
[co.lom.bi.en'sis] N.L. fem. adj. colombiensis, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119326.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_833. Genomic metrics include ANI (87.3), AAI (82.62) and dDDH d4 (29.7). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 73 CAZymes, 13 of them involved in lignocellulose degradation. In addition, putative genes for protocatechuate and phtalate catabolism were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Caulobacterales » Caulobacteraceae » Brevundimonas » Brevundimonas colombiensis
References
Effective publication: Díaz-García et al., 2024 [1]

Species Cohnella colombiensis

Etymology
[co.lom.bi.en'sis] N.L. fem. adj. colombiensis, belonging to Colombia
Nomenclatural type
INSDC Nucleotide: CP119317.1 Ts
Description
The species is established on the basis of MiGA taxonomic novelty analysis, the taxonmic placement using maximum likelihood trees with 120 bacterial marker genes (bac120) and and the type material is the genome MAG_2441. Genomic metrics include ANI (67.06), AAI (67.21) and dDDH d4 (30.4). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 149 CAZymes, 44 of them involved in lignocellulose degradation. In addition, putative genes for PET and PUR hydrolisis were found within the MAG.
Classification
Bacteria » Bacillota » Bacilli » Caryophanales » Paenibacillaceae » Cohnella » Cohnella colombiensis
References
Effective publication: Díaz-García et al., 2024 [1]

Species Brevundimonas phytovorans

Etymology
[phy.to.vo'rans.] Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring
Nomenclatural type
INSDC Nucleotide: CP119309.1 Ts
Description
A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_1865. Genomic metrics include ANI (91.28), AAI (87.92) and dDDH d4 (40.3). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 39 CAZymes, 6 of them involved in lignocellulose degradation. In addition, putative genes for protocatechuate and phtalate catabolism were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Caulobacterales » Caulobacteraceae » Brevundimonas » Brevundimonas phytovorans
References
Effective publication: Díaz-García et al., 2024 [1]

References

  1. Díaz-García et al. (2024). Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes. Systematic and Applied Microbiology. DOI:10.1016/j.syapm.2023.126485

Register List Certificate of Validation

On behalf of the Committee on the Systematics of Prokaryotes Described from Sequence Data (SeqCode Committee), we hereby certify that the Register List seqco.de/r:-kiq_w89 submitted by Díaz-García, Laura and including 16 new names has been successfully validated.


Date of Priority: 2024-01-25 09:26 UTC
DOI: 10.57973/seqcode.r:-kiq_w89