SeqCode Registry
Register List https://seqco.de/r:8lujptmc [2024]

Register list for 7 new names including Pseudoplanktomarina gen. nov.

Submitted by Brinkhoff, Thorsten

Genus Pseudoplanktomarina

Etymology
[Pseu.do.plank.to.ma.ri'na] Gr. neut. adj. pseudes, false; N.L. fem. n. Planktomarina, a marine bacterial genus; N.L. fem. n. Pseudoplanktomarina, the false Planktomarina
Nomenclatural type
Species Pseudoplanktomarina karensisTs
Description
Members of Candidatus Pseudoplanktomarina genus are aerobic heterotrophic bacteria with an average genomes size 2.41 Mbp (raw: 2.17 Mbp) and a GC content of 0.43. Currently, there are three distinct species exhibiting different distribution patterns across the global ocean. All species in this group contain a proteorhodopsin gene, however, lack genes for sox and CODH clusters. Entner-Doudoroff and pentose phosphate pathways are two major pathways for glycolysis catabolism in Candidatus Pseudoplanktomarina. Additionally, genes involved in DMSP and DHPS degradation are also present in this genus. The type species of the genus Pseudoplanktomarina is Pseudoplanktomarina karensis
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Pseudoplanktomarina
References
Effective publication: Liu et al., 2023 [1]

Species Pseudoplanktomarina karensisTs

Etymology
[kar.en'sis] N.L. fem. adj. karensis, pertaining to the Kara Sea, corresponding to the origin from where the genome was recovered (Kara Sea)
Nomenclatural type
NCBI Assembly: GCA_951541495.1 Ts
Description
The type material, GCA_951541495.1 (MAG B2-20), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Kara Sea, Arctic Ocean (Biosample accession: SAMEA4397239). The assembly genome is of high quality with 95.6 % completeness with 0.02 % contamination and the genome contains 16 tRNA genes. The genome size is 2.28 (raw: 2.18) with a GC content of 0.44. Pseudoplanktomarina karensis is the type species of the new genus Pseudoplanktomarina
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Pseudoplanktomarina » Pseudoplanktomarina karensisTs
References
Effective publication: Liu et al., 2023 [1]

Species Planktomarina antarctica

Etymology
[ant.arc'ti.ca] L. fem. adj. antarctica, of the Antarctic, corresponding to the origin from where the genome was recovered (Antarctic ocean)
Nomenclatural type
NCBI Assembly: GCA_029962705.1 Ts
Description
The type material, GCA_029962705.1 (MAG C5-3), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Southern Ocean in 2012 (Biosample accession: SAMEA5958381). The assembly genome is of high quality with 94.16% completeness and 1.77 % contamination and contains 16 tRNA genes. The genome size is 2.80 Mbp (raw: 2.68 Mbp) with a GC content of 0.48. 
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina antarctica
References
Effective publication: Liu et al., 2023 [1]

Species Planktomarina arctica

Etymology
[arc'ti.ca] L. fem. adj. arctica, northern, from the Arctic, corresponding to the origin from where the genome was recovered (Arctic ocean)
Nomenclatural type
NCBI Assembly: GCA_951542345.1 Ts
Description
The type material, GCA_951542345.1 (MAG C4-4), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Arctic Ocean in 2013 (Biosample accession: SAMEA4397426). The completeness and contamination of the assembly are 93.42% and 0.41%, respectively. Genome assembly contains 14 tRNA genes. The genome size is 2.64 (raw: 2.47 Mbp) with a GC content of 0.48. 
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina arctica
References
Effective publication: Liu et al., 2023 [1]

Species Planktomarina forsetii

Etymology
[for.set'i.i] N.L. gen. n. forsetii, of Forseti, Scandinavian god of justice and reconciliation resident on Helgoland, from where the genome was recovered.
Nomenclatural type
NCBI Assembly: GCA_951543265.1 Ts
Description
The type material, GCA_951543265.1 (MAG C3-11), is a metagenome-assembled genome derived from a water sample (Biosample: SAMEA5407188). The assembly is of high quality with a mean completeness of 96.74% and 0.1% contamination and contains 19 tRNAs. The genome size is 3.12 Mbp (raw: 3.02 Mbp) with a GC content of 0.51. 
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina forsetii
References
Effective publication: Liu et al., 2023 [1]

References

  1. Liu et al. (2023). Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster. Microbiome. DOI:10.1186/s40168-023-01644-5

Register List Certificate of Validation

On behalf of the Committee on the Systematics of Prokaryotes Described from Sequence Data (SeqCode Committee), we hereby certify that the Register List seqco.de/r:8lujptmc submitted by Brinkhoff, Thorsten and including 5 new names has been successfully validated.


Date of Priority: 2024-07-30 10:55 UTC
DOI: 10.57973/seqcode.r:8lujptmc