Register list for 7 new names including Pseudoplanktomarina gen. nov.
Submitted by Brinkhoff, Thorsten
Genus Pseudoplanktomarina
- Etymology
- [Pseu.do.plank.to.ma.ri'na] Gr. neut. adj. pseudes, false; N.L. fem. n. Planktomarina, a marine bacterial genus; N.L. fem. n. Pseudoplanktomarina, the false Planktomarina
- Nomenclatural type
- Species Pseudoplanktomarina karensisTs
- Description
-
Members of Candidatus Pseudoplanktomarina genus are aerobic heterotrophic bacteria with an average genomes size 2.41 Mbp (raw: 2.17 Mbp) and a GC content of 0.43. Currently, there are three distinct species exhibiting different distribution patterns across the global ocean. All species in this group contain a proteorhodopsin gene, however, lack genes for sox and CODH clusters. Entner-Doudoroff and pentose phosphate pathways are two major pathways for glycolysis catabolism in Candidatus Pseudoplanktomarina. Additionally, genes involved in DMSP and DHPS degradation are also present in this genus. The type species of the genus Pseudoplanktomarina is Pseudoplanktomarina karensis.
- Classification
- Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Pseudoplanktomarina
- References
-
Effective publication:
Liu et al., 2023 [1]
- Registry URL
- https://seqco.de/i:24061
Species Pseudoplanktomarina karensisTs
- Etymology
- [kar.en'sis] N.L. fem. adj. karensis, pertaining to the Kara Sea, corresponding to the origin from where the genome was recovered (Kara Sea)
- Nomenclatural type
- NCBI Assembly: GCA_951541495.1 Ts
- Description
-
The type material, GCA_951541495.1 (MAG B2-20), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Kara Sea, Arctic Ocean (Biosample accession: SAMEA4397239). The assembly genome is of high quality with 95.6 % completeness with 0.02 % contamination and the genome contains 16 tRNA genes. The genome size is 2.28 (raw: 2.18) with a GC content of 0.44. Pseudoplanktomarina karensis is the type species of the new genus Pseudoplanktomarina.
- Classification
- Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Pseudoplanktomarina » Pseudoplanktomarina karensisTs
- References
-
Effective publication:
Liu et al., 2023 [1]
- Registry URL
- https://seqco.de/i:24063
Species Planktomarina antarctica
- Etymology
- [ant.arc'ti.ca] L. fem. adj. antarctica, of the Antarctic, corresponding to the origin from where the genome was recovered (Antarctic ocean)
- Nomenclatural type
- NCBI Assembly: GCA_029962705.1 Ts
- Description
-
The type material, GCA_029962705.1 (MAG C5-3), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Southern Ocean in 2012 (Biosample accession: SAMEA5958381). The assembly genome is of high quality with 94.16% completeness and 1.77 % contamination and contains 16 tRNA genes. The genome size is 2.80 Mbp (raw: 2.68 Mbp) with a GC content of 0.48.
- Classification
- Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina antarctica
- References
-
Effective publication:
Liu et al., 2023 [1]
- Registry URL
- https://seqco.de/i:24060
Species Planktomarina arctica
- Etymology
- [arc'ti.ca] L. fem. adj. arctica, northern, from the Arctic, corresponding to the origin from where the genome was recovered (Arctic ocean)
- Nomenclatural type
- NCBI Assembly: GCA_951542345.1 Ts
- Description
-
The type material, GCA_951542345.1 (MAG C4-4), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Arctic Ocean in 2013 (Biosample accession: SAMEA4397426). The completeness and contamination of the assembly are 93.42% and 0.41%, respectively. Genome assembly contains 14 tRNA genes. The genome size is 2.64 (raw: 2.47 Mbp) with a GC content of 0.48.
- Classification
- Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina arctica
- References
-
Effective publication:
Liu et al., 2023 [1]
- Registry URL
- https://seqco.de/i:24058
Species Planktomarina forsetii
- Etymology
- [for.set'i.i] N.L. gen. n. forsetii, of Forseti, Scandinavian god of justice and reconciliation resident on Helgoland, from where the genome was recovered.
- Nomenclatural type
- NCBI Assembly: GCA_951543265.1 Ts
- Description
-
The type material, GCA_951543265.1 (MAG C3-11), is a metagenome-assembled genome derived from a water sample (Biosample: SAMEA5407188). The assembly is of high quality with a mean completeness of 96.74% and 0.1% contamination and contains 19 tRNAs. The genome size is 3.12 Mbp (raw: 3.02 Mbp) with a GC content of 0.51.
- Classification
- Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina forsetii
- References
-
Effective publication:
Liu et al., 2023 [1]
- Registry URL
- https://seqco.de/i:24046
References
- Liu et al. (2023). Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster. Microbiome. DOI:10.1186/s40168-023-01644-5
Register List Certificate of Validation
On behalf of the Committee on the Systematics of Prokaryotes Described from Sequence Data (SeqCode Committee), we hereby certify that the Register List seqco.de/r:8lujptmc submitted by Brinkhoff, Thorsten and including 5 new names has been successfully validated.
Date of Priority:
2024-07-30 10:55 UTC
DOI: 10.57973/seqcode.r:8lujptmc