Strain sc|0024444


This strain is associated as type material for multiple names:

StrainInfo: SI-ID 11669 T

Taxon
Novosphingobium aromaticivorans
Sample
Deep saturated Atlantic coastal plain sediments (US)
Cultures (11)
LMG 18303 = ATCC 700278 = CIP 105152 = DSM 12444 = IFO 16084 = KCTC 2888 = BCRC 17176 = CCRC 17176 = HAMBI 2257 = CCUG 56443 = CCUG 56304
Other Designations (2)
SMCC F199 = F199
Sequences (4)
Associated Publications (23)
  • DOI: 10.1074/jbc.M110.118349
    Yang W, Bell SG, Wang H, Zhou W, Hoskins N, Dale A, Bartlam M, Wong LL, Rao Z (2010). Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.
  • DOI: 10.1042/BJ20101017
    Yang W, Bell SG, Wang H, Zhou W, Bartlam M, Wong LL, Rao Z (2011). The structure of CYP101D2 unveils a potential path for substrate entry into the active site.
  • DOI: 10.1002/cbic.201000537
    Ma M, Bell SG, Yang W, Hao Y, Rees NH, Bartlam M, Zhou W, Wong LL, Rao Z (2011). Structural Analysis of CYP101C1 from Novosphingobium aromaticivorans DSM12444.
  • DOI: 10.1016/j.ymben.2021.02.003
    Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JK (2021). Pathway discovery and engineering for cleavage of a beta-1 lignin-derived biaryl compound.
  • DOI: 10.1002/cbic.200700724
    Marasco EK, Schmidt-Dannert C (2008). Identification of bacterial carotenoid cleavage dioxygenase homologues that cleave the interphenyl alpha,beta double bond of stilbene derivatives via a monooxygenase reaction.
  • DOI: 10.1107/S1744309109005648
    Hong C, Bell SG, Yang W, Wang H, Hao Y, Li X, Zhou W, Bartlam M, Wong LL (2009). Purification, crystallization and preliminary X-ray analysis of cytochrome P450 219A1 from Novosphingobium aromaticivorans DSM 12444.
  • Cui Z, Shao Z (2009). [Predominant strains of polycyclic aromatic hydrocarbon-degrading consortia from deep sea of the Middle Atlantic Ridge].
  • DOI: 10.1107/S174430911102464X
    Zhou R, Huang C, Zhang A, Bell SG, Zhou W, Wong LL (2011). Crystallization and preliminary X-ray analysis of CYP153C1 from Novosphingobium aromaticivorans DSM12444.
  • DOI: 10.1107/S090744491200145X
    Bell SG, Yang W, Yorke JA, Zhou W, Wang H, Harmer J, Copley R, Zhang A, Zhou R, Bartlam M, Rao Z, Wong LL (2012). Structure and function of CYP108D1 from Novosphingobium aromaticivorans DSM12444: an aromatic hydrocarbon-binding P450 enzyme.
  • DOI: 10.1016/j.enzmictec.2012.10.004
    Fukuhara Y, Kamimura N, Nakajima M, Hishiyama S, Hara H, Kasai D, Tsuji Y, Narita-Yamada S, Nakamura S, Katano Y, Fujita N, Katayama Y, Fukuda M, Kajita S, Masai E (2012). Discovery of pinoresinol reductase genes in sphingomonads.
  • DOI: 10.4014/jmb.1212.12053
    Kim JK, He D, Liu QM, Park HY, Jung MS, Yoon MH, Kim SC, Im WT (2013). Novosphingobium ginsenosidimutans sp. nov., with the ability to convert ginsenoside.
  • DOI: 10.1002/pro.2309
    Vohra S, Musgaard M, Bell SG, Wong LL, Zhou W, Biggin PC (2013). The dynamics of camphor in the cytochrome P450 CYP101D2.
  • DOI: 10.1128/JB.00900-13
    Das D, Herve M, Elsliger MA, Kadam RU, Grant JC, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA (2013). Structure and function of a novel LD-carboxypeptidase a involved in peptidoglycan recycling.
  • DOI: 10.1126/science.1246489
    Lee JY, Yang JG, Zhitnitsky D, Lewinson O, Rees DC (2014). Structural basis for heavy metal detoxification by an Atm1-type ABC exporter.
  • DOI: 10.1021/es503886d
    Gall DL, Ralph J, Donohue TJ, Noguera DR (2014). A group of sequence-related sphingomonad enzymes catalyzes cleavage of beta-aryl ether linkages in lignin beta-guaiacyl and beta-syringyl ether dimers.
  • DOI: 10.1021/jacs.9b08064
    Sarkar MR, Houston SD, Savage GP, Williams CM, Krenske EH, Bell SG, De Voss JJ (2019). Rearrangement-Free Hydroxylation of Methylcubanes by a Cytochrome P450: The Case for Dynamical Coupling of C-H Abstraction and Rebound.
  • DOI: 10.1021/acssynbio.9b00443
    Sun H, Zhao H, Ang EL (2020). A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator.
  • DOI: 10.1128/MRA.00880-20
    Myers KS, Vera JM, Lemmer KC, Linz AM, Landick R, Noguera DR, Donohue TJ (2020). Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444.
  • DOI: 10.1128/AEM.02794-20
    Perez JM, Kontur WS, Gehl C, Gille DM, Ma Y, Niles AV, Umana G, Donohue TJ, Noguera DR (2021). Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics.
  • DOI: 10.3390/biom13030541
    He Z, Ke Z, Wang W, Liu Y, Zhang H, Li Y (2023). Biophysical and Biochemical Characterization of the Binding of the MarR-like Transcriptional Regulator Saro_0803 to the nov1 Promotor and Its Inhibition by Resveratrol.
  • DOI: 10.1128/aem.01660-23
    Vilbert AC, Kontur WS, Gille D, Noguera DR, Donohue TJ (2023). Engineering Novosphingobium aromaticivorans to produce cis,cis-muconic acid from biomass aromatics.
  • DOI: 10.1128/mbio.01718-24
    Metz F, Olsen AM, Lu F, Myers KS, Allemann MN, Michener JK, Noguera DR, Donohue TJ (2024). Catabolism of beta-5 linked aromatics by Novosphingobium aromaticivorans.
  • DOI: 10.1099/ijs.0.060749-0
    Lee JC, Kim SG, Whang KS (2014). Novosphingobium aquiterrae sp. nov., isolated from ground water.
Outside links and data sources
Retrieved about 1 month ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL
https://seqco.de/s:24444
Local history
  • Registered 8 months ago
  • Last modified about 1 month ago
© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license