Strain sc|0025657

StrainInfo: SI-ID 3833 ^T

Taxon

Photobacterium leiognathi

Sample

Teleostean fish, light organ (TH)

Cultures (12)

LMG 4228 = ATCC 25521 = CCUG 16229 = NCMB 2193 = CIP 665 = NCIMB 2193 = CECT 4191 = CCRC 13806 = BCRC 13806 = KCTC 12280 = CIP 66.5 = DSM 21260

Other Designations (6)

CAIM 327 = WDCM 00113 = Boisvert L1 = CDC 9094-79 = Baumann = LMG4228T QC 2/06

Sequences (27)

• Gene Nucleotide:AJ580848
  Photobacterium leiognathi partial mRNA for recombination-repair protein (recA gene), type strain LMG 4228T
• Gene Nucleotide:AJ842364
  Photobacterium leiognathi partial recA gene, strain LMG 4228T
• Gene Nucleotide:AJ842550
  Photobacterium leiognathi partial rpoA gene for RNA polymerase alpha-subunit, strain LMG 4228T
• rRNA Operon Nucleotide:D11233
  Photobacterium leiognathi 16S rRNA
• rRNA Operon Nucleotide:X74686
  Photobacterium leiognathi (ATCC 25521T) gene for 16S ribosomal RNA
• Gene Nucleotide:EF536344
  Photobacterium leiognathi strain ATCC 25521 proline dehydrogenase (putA) gene, partial cds; LumQ (lumQ) gene, complete cds; and lux-rib operon, partial sequence
• Gene Nucleotide:AF039303
  Photobacterium leiognathi chaperone precursor (luzA) gene, complete cds
• rRNA Operon Nucleotide:D25309
  Photobacterium leiognathi gene for 16S rRNA
• Gene Nucleotide:X81065
  P.leiognathi sod-2 gene
• Gene Nucleotide:EF415492
  Photobacterium leiognathi strain ATCC 25521 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds
• rRNA Operon Nucleotide:D11184
  Photobacterium leiognathi 16S rRNA, partial sequence
• Gene Nucleotide:EF415546
  Photobacterium leiognathi strain ATCC 25521 recombinase A (recA) gene, partial cds
• Gene Nucleotide:EF415581
  Photobacterium leiognathi strain ATCC 25521 DNA-directed RNA polymerase alpha subunit (rpoA) gene, partial cds
• Gene Nucleotide:JX893632
  Photobacterium leiognathi strain ATCC 25521 general secretion pathway protein J gene, partial cds
• Gene Nucleotide:AF168381
  Photobacterium leiognathi phosphatidylserine synthase (pss) gene, partial cds
• Gene Nucleotide:HQ333487
  Photobacterium leiognathi strain ATCC 25521 AtpA (atpA) gene, partial cds
• Gene Nucleotide:AF136385
  Photobacterium leiognathi gyrase B (gyrB) gene, partial cds
• Gene Nucleotide:AF019143
  Photobacterium leiognathi pyruvate kinase I (pkI) gene, partial cds
• Gene Nucleotide:EF536341
  Photobacterium leiognathi strain ATCC 25521 lux-rib operon, partial sequence; and hypothetical multidrug resistance efflux pump gene, partial cds
• Gene Nucleotide:JX893654
  Photobacterium leiognathi strain ATCC 25521 HlyD family protein gene, partial cds
• Gene Nucleotide:EF415598
  Photobacterium leiognathi strain ATCC 25521 RNA polymerase sigma factor (rpoD) gene, partial cds
• Gene Nucleotide:AB050791
  Photobacterium leiognathi sodB gene for iron-cofactored superoxide dismutase, partial cds, strain: ATCC 25521
• Gene Nucleotide:EF380238
  Photobacterium leiognathi strain ATCC 25521 uridylate kinase (pyrH) gene, partial cds
• Gene Nucleotide:AY455879
  Photobacterium leiognathi strain ATCC 25521 DNA gyrase subunit B (gyrB) gene, partial cds
• Genome Assembly:GCA_030685535
  Photobacterium leiognathi ATCC 25521
• Genome Assembly:GCA_003026235
  Photobacterium leiognathi ATCC 25521
• Genome Assembly:GCA_000950415
  Photobacterium leiognathi ATCC 25521

Associated Publications (10)

• DOI: 10.1099/ijs.0.63370-0
  Thompson FL, Thompson CC, Naser S, Hoste B, Vandemeulebroecke K, Munn C, Bourne D, Swings J (2005). Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching.
• DOI: 10.1111/j.1432-1033.1991.tb16269.x
  Lee CY, Szittner RB, Meighen EA (1991). The lux genes of the luminous bacterial symbiont, Photobacterium leiognathi, of the ponyfish. Nucleotide sequence, difference in gene organization, and high expression in mutant Escherichia coli.
• DOI: 10.1128/jb.165.2.393-398.1986
  Dunlap PV, Steinman HM (1986). Strain variation in bacteriocuprein superoxide dismutase from symbiotic Photobacterium leiognathi.
• DOI: 10.1006/bbrc.1997.7461
  Lin JW, Lu HC, Chen HY, Weng SF (1997). The pkI gene encoding pyruvate kinase I links to the luxZ gene which enhances bioluminescence of the lux operon from Photobacterium leiognathi.
• DOI: 10.1006/bbrc.1998.8359
  Lin JW, Lin BJ, Chen HY, Weng SF (1998). Characteristics analysis of the luzA gene encoding chaperone from Photobacterium leiognathi related to bioluminescence.
• DOI: 10.1006/bbrc.1998.8641
  Lin JW, Chao YF, Weng SF (1998). Characteristic analysis of the luxG gene encoding the probable flavin reductase that resides in the lux operon of Photobacterium leiognathi.
• DOI: 10.1007/s00203-004-0663-7
  Ast JC, Dunlap PV (2004). Phylogenetic analysis of the lux operon distinguishes two evolutionarily distinct clades of Photobacterium leiognathi.
• DOI: 10.1128/JB.00672-07
  Ast JC, Urbanczyk H, Dunlap PV (2007). Natural merodiploidy of the lux-rib operon of Photobacterium leiognathi from coastal waters of Honshu, Japan.
• DOI: 10.1099/ijsem.0.006096
  Hong W, Wang X, Yuan Y, Liu R, Zhao W, Xue CX, Zhang XH (2023). Photobacterium obscurum sp. nov., a marine bacterium isolated from the coast of Qingdao.
• DOI: 10.1016/s0923-2508(99)80039-4
  Caccamo D, Di Cello F, Fani R, Gugliandolo C, Maugeri TL (1999). Polyphasic approach to the characterisation of marine luminous bacteria.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID3833.3

Retrieved about 1 month ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:25657

Local history

• Registered 8 months ago
• Last modified about 1 month ago